Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAD_1012Hypothetical protein; Orthologue of BL1427. (214 aa)    
Predicted Functional Partners:
hrdB
RNA polymerase principal sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.634
gyrB2
COG family: DNA gyrase (topoisomerase II) Bsubunit; Orthologue of BL1429; PFAM_ID: DNA_gyraseB_C; PFAM_ID: DNA_topoisoII; PFAM_ID: HATPase_c.
       0.540
pknA2
Probable serine-threonine protein kinase pknA2; COG family: serine_threonine proteinkinases; Orthologue of BL1425; PFAM_ID: pkinase.
       0.531
idsA
Probably bifunctional short chain isoprenyl diphosphate synthase; COG family: geranylgeranyl pyrophosphatesynthase; Orthologue of BL1426; PFAM_ID: polyprenyl_synt; includes: farnesylpyrophosphate synthetase (Fpp synthetase)(dimethylallyltransferase); geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.499
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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