Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAD_1069Widely conserved protein similar to those annotated as GTP-binding elongation factor TypA/BipA; COG family: predicted membrane GTPase involved instress response; Orthologue of BL1379; PFAM_ID: GTP_EFTU. (643 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.637
gltB
Glutamate synthase [NADPH] large subunit; Orthologue of Rv3859c_BL0834; ProbablegltB_ ferredoxin-dependent glutamate synthase largesubunit (EC 1.4.1.13).
   
  
 0.615
BAD_1068
Hypothetical protein; Orthologue of BL1380.
       0.615
rpmI
COG family: ribosomal protein L35; Orthologue of BL1366a; PFAM_ID:Ribosomal_L35p; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.587
rpsI
COG family: ribosomal protein S9; Orthologue of BL1572; PFAM_ID:Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family.
   
    0.565
infC
Translation initiation factor If-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
  
 
 0.562
pheA
Probable chorismate mutase; COG family: prephenate dehydratase; Orthologue of BL1381; PFAM_ID: ACT; PFAM_ID:PDT.
     
 0.555
BAD_0623
COG family: superfamily II DNA and RNA helicases; Identified by sequence similarity; Orthologue of BL0909; PFAM_ID: DEAD; PFAM_ID: helicase_C.
 
  
 0.549
tyrA
COG family: prephenate dehydrogenase; Orthologue of BL1382; PFAM_ID: PDH.
       0.544
BAD_1070
Probable sugar transporter; COG family: permeases of the major facilitatorsuperfamily; Orthologue of BL1378; PFAM_ID: sugar_tr.
  
    0.533
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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