Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAD_1502Hypothetical protein; Orthologue of mlr7560. (647 aa)    
Predicted Functional Partners:
BAD_1503
Hypothetical protein; Orthologue of Mbar_A2235.
 
     0.957
BAD_1506
Nucleoside-diphosphate-sugar epimerases-like; Orthologue of Pcar_1128.
 
     0.770
rmlCD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.707
BAD_1501
Possible permease protein of ABC transporter system for export of polysaccharide; COG family: membrane permeases involved in cellwall biosynthesis; Orthologue of BL0208; PFAM_ID: ABC2_membrane.
     
 0.609
rgpDc
Protein possibly involved in ATP-driven polysaccharide export; COG family: ABC-type polysaccharide_polyolphosphate transport system_ ATPase component; Orthologue of BL0207; PFAM_ID:ABC_tran.
     
 0.599
BAD_1033
Hypothetical protein; COG family: uncharacterized Bcr; Orthologue of BL1407.
   
    0.538
BAD_1562
Hypothetical protein; COG family: 4-hydroxybenzoate polyprenyltransferaseand related prenyltransferases; Orthologue of BL0145.
  
     0.500
BAD_1345
Hypothetical protein; COG family: uncharacterized Bcr; Orthologue of BL1154.
  
     0.460
BAD_1622
Hypothetical protein; Orthologue of BL0650.
  
     0.456
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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