STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAD_1563Permease of ABC transporter possibly for oligosaccharides; COG family: sugar permeases; Orthologue of BL0144; PFAM_ID: BPD_transp. (280 aa)    
Predicted Functional Partners:
BAD_1564
Permease of ABC transporter possibly for oligosaccharides; COG family: ABC-type sugar transport systems_permease components; Orthologue of BL0143; PFAM_ID: BPD_transp.
 
0.994
msmF
COG family: ABC-type sugar transport systems_permease components; Orthologue of BL1522; PFAM_ID: BPD_transp.
 
 0.988
msiK-2
ATP binding protein of ABC transporter for sugars; COG family: ABC-typesugar_spermidine_putrescine_iron_thiamine transportsystems_ ATPase component; Orthologue of BL0673; PFAM_ID: ABC_tran; Belongs to the ABC transporter superfamily.
 
 0.986
msmE
COG family: sugar-binding periplasmicproteins_domains; Orthologue of BL1521; PFAM_ID: SBP_bacterial_1.
 
 0.968
BAD_0426
Putative binding protein-dependent transporter; Orthologue of SAV4980.
 0.965
BAD_0972
Possible solute binding protein of ABC transporter; COG family: sugar-binding periplasmicproteins_domains; Orthologue of BL0141; PFAM_ID: SBP_bacterial_1.
 
  0.963
BAD_1566
Possible solute binding protein of ABC transporter; Orthologue of BL0141.
 
  0.963
BAD_1586
ABC transporter_ membrane spanning protein[sugar]; Identified by sequence similarity; Orthologue of Atu2506.
  0.963
malF-2
ABC-type sugar transport systems, permease components; Orthologue of TTE0800.
 0.960
msmG
COG family: sugar permeases; Orthologue of BL1523; PFAM_ID:BPD_transp.
  
  
 
0.917
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 367928
Other names: B. adolescentis ATCC 15703, Bifidobacterium adolescentis ATCC 15703, Bifidobacterium adolescentis str. ATCC 15703, Bifidobacterium adolescentis strain ATCC 15703
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