STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
resA_4Thiol-disulfide oxidoreductase ResA. (203 aa)    
Predicted Functional Partners:
gpmB
Phosphoglycerate mutase GpmB.
  
   0.922
KXZ60784.1
Cytochrome C biogenesis protein transmembrane region.
 
  
 0.908
ccsB
Cytochrome c biogenesis protein CcsB.
 
    0.879
msrA3
Peptide methionine sulfoxide reductase MsrA 3; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.829
ccsA_3
Cytochrome c biogenesis protein CcsA.
 
    0.822
ctaC
Cytochrome c oxidase subunit 2 precursor.
  
 
 
 0.797
trxB_3
Thioredoxin reductase.
  
 0.769
KXZ61124.1
Hypothetical protein.
    
 0.740
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.702
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.689
Your Current Organism:
Microbacterium laevaniformans
NCBI taxonomy Id: 36807
Other names: ATCC 15953, CIP 100934, Corynebacterium laevaniformans, DSM 20140, IFO 14471, JCM 9181, M. laevaniformans, NBRC 14471, NCIB 9659, NCIB:9659, NCIMB 9659
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