STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANO23392.1Alkaline-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)    
Predicted Functional Partners:
ANO23391.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.823
ANO26878.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
ANO23388.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
 
   
 0.558
ANO23390.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ANO26877.1
DUF2273 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ANO25271.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.539
ANO23389.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.507
valS
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.446
trpS
tryptophan--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.446
argS
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.431
Your Current Organism:
Mycobacteroides abscessus
NCBI taxonomy Id: 36809
Other names: ATCC 19977, CCUG 20993, CIP 104536, DSM 44196, JCM 13569, M. abscessus, Mycobacterium abscessus, Mycobacterium chelonae subsp. abscessus, Mycobacterium chelonei subsp. abscessus, NCTC 13031, strain Hauduroy L948
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