STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pimE_3Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
ANO23943.1
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
     
 0.798
aroG
3-deoxy-7-phosphoheptulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II DAHP synthase family.
       0.719
ANO23939.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.588
ANO24796.1
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.565
eccB4
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.507
ANO23941.1
Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
ANO25702.1
tRNA pseudouridine(38,39,40) synthase TruA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.464
kch
Potassium transporter Kef; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
ANO24573.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.441
ANO26662.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.441
Your Current Organism:
Mycobacteroides abscessus
NCBI taxonomy Id: 36809
Other names: ATCC 19977, CCUG 20993, CIP 104536, DSM 44196, JCM 13569, M. abscessus, Mycobacterium abscessus, Mycobacterium chelonae subsp. abscessus, Mycobacterium chelonei subsp. abscessus, NCTC 13031, strain Hauduroy L948
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