STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytRLytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.899
ANO25555.1
TIGR03089 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.808
wbbL
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.789
glgC_1
GDP-mannose pyrophosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
ANO25613.1
Primosomal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
ANO25505.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
ANO25678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
ANO23254.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.634
glfT1
Galactofuranosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.604
embC_2
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
Your Current Organism:
Mycobacteroides abscessus
NCBI taxonomy Id: 36809
Other names: ATCC 19977, CCUG 20993, CIP 104536, DSM 44196, JCM 13569, M. abscessus, Mycobacterium abscessus, Mycobacterium chelonae subsp. abscessus, Mycobacterium chelonei subsp. abscessus, NCTC 13031, strain Hauduroy L948
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