Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABN55937.1PFAM: regulatory protein, AsnC/Lrp family; KEGG: mhu:Mhun_2472 transcriptional regulator, AsnC family. (163 aa)    
Predicted Functional Partners:
ABN55938.1
PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_2473 aminotransferase, class I and II.
 
   
 0.979
cdc6
AAA ATPase; Involved in regulation of DNA replication.
  
    0.936
rps8e
TIGRFAM: ribosomal protein S8e; PFAM: ribosomal protein S8E; KEGG: mhu:Mhun_2485 ribosomal protein S8.e.
       0.728
ABN57435.1
PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_0911 aminotransferase, class I and II.
 
   
 0.505
ABN55994.1
PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_2478 aminotransferase, class I and II.
 
   
 0.466
ABN55939.1
Hypothetical protein.
       0.401
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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