STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABN56737.1KEGG: mtp:Mthe_1292 hypothetical protein. (326 aa)    
Predicted Functional Partners:
rfcS
Replication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
       0.610
ABN56736.1
Hypothetical protein.
       0.499
ABN57144.1
PFAM: Ig domain protein, group 2 domain protein; KEGG: mac:MA0783 hypothetical protein.
  
     0.497
ABN56391.1
PFAM: Bacterio-opsin activator, HTH domain protein; KEGG: nph:NP4436A predicted DNA binding protein.
  
     0.475
ABN57143.1
PFAM: Ig domain protein, group 2 domain protein; KEGG: mac:MA0783 hypothetical protein.
  
     0.441
ABN56829.1
KEGG: mhu:Mhun_1562 hypothetical protein.
  
     0.402
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.