STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABN57904.1PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mhu:Mhun_3010 xylose isomerase-like TIM barrel. (274 aa)    
Predicted Functional Partners:
ABN57905.1
KEGG: mhu:Mhun_3009 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type.
       0.681
ABN57903.1
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mhu:Mhun_3011 protein of unknown function DUF21.
       0.602
ABN57074.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mhu:Mhun_0442 hypothetical protein.
 
     0.552
ABN56792.1
Cytidine kinase / inosine-guanosine kinase; PFAM: PfkB domain protein; KEGG: mhu:Mhun_0077 PfkB; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.538
ABN57902.1
TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: mhu:Mhun_3012 phosphoribosylglycinamide formyltransferase.
       0.538
rnp4
Ribonuclease P protein subunit Rpp21; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
 
     0.526
pfdA
Prefoldin, alpha subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
 
     0.519
ABN57900.1
PFAM: protein of unknown function UPF0044; KEGG: mhu:Mhun_3014 RNA-binding protein containing KH domain possibly ribosomal protein-like.
 
     0.490
ABN56533.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mja:MJ1614 hypothetical protein.
 
     0.489
ABN57484.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mhu:Mhun_1715 xylose isomerase-like TIM barrel.
 
     0.472
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.