Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABN57936.1PFAM: protein of unknown function DUF75; KEGG: mhu:Mhun_0058 hypothetical protein. (237 aa)    
Predicted Functional Partners:
ABN57937.1
KEGG: mhu:Mhun_0057 protein of unknown function DUF473.
  
   0.990
ABN57358.1
KEGG: mhu:Mhun_2995 hypothetical protein.
  
    0.855
ABN57935.1
KEGG: mhu:Mhun_2924 hypothetical protein.
       0.819
ABN56159.1
PFAM: NADPH-dependent FMN reductase; KEGG: mth:MTH1595 hypothetical protein.
  
    0.808
ABN57612.1
PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2.
 
     0.744
albA
Nucleoid protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
    0.719
psmA
Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
   
 
 0.698
ABN57885.1
PFAM: Protein of unknown function DUF655; KEGG: mhu:Mhun_3028 protein of unknown function DUF655.
 
     0.673
ABN57345.1
PFAM: Protein of unknown function UPF0147; KEGG: mhu:Mhun_1710 protein of unknown function UPF0147; Belongs to the UPF0147 family.
 
     0.663
dnaG
TOPRIM domain protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
     0.628
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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