Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABN58090.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
ABN58091.1
KEGG: mhu:Mhun_2336 RNA polymerase, dimerisation.
       0.501
ABN58092.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmp:MMP1179 SAM (and some other nucleotide) binding motif:generic methyltransferase.
       0.501
ABN58089.1
KEGG: mbu:Mbur_1749 hypothetical protein.
       0.414
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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