STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ef1bTranslation elongation factor 1B (aEF-1B); Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (84 aa)    
Predicted Functional Partners:
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
 0.998
ABN58367.1
PFAM: Protein of unknown function DUF1610; KEGG: mhu:Mhun_2345 protein of unknown function DUF1610.
  
  
 0.995
rps3
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
 0.993
rpl29
PFAM: ribosomal protein L29; KEGG: mhu:Mhun_2246 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
 
 
 0.993
rpl15e
PFAM: Ribosomal protein L15e; KEGG: mhu:Mhun_2279 ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.989
rpl21e
PFAM: ribosomal protein L21e; KEGG: mhu:Mhun_3026 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.989
rpl14
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.988
rps17e
KEGG: mhu:Mhun_1491 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
 
   0.988
rps24e
PFAM: Ribosomal protein S24e; KEGG: mac:MA3695 ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.988
rpl24e
LSU ribosomal protein L24E; Binds to the 23S rRNA.
   
   0.986
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.