Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABN58421.1PFAM: KH, type 1, domain protein; SMART: KH domain protein; KEGG: mhu:Mhun_2465 KH, type 1. (180 aa)    
Predicted Functional Partners:
ABN58164.1
SSU processome protein Utp24; SMART: Nucleotide binding protein, PINc; KEGG: mhu:Mhun_2862 nucleotide binding protein, PINc.
  
 0.986
ABN58420.1
PFAM: protein of unknown function RIO1; KEGG: mhu:Mhun_2464 protein of unknown function RIO1.
 
  
 0.985
rps4
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 0.982
ABN56474.1
rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; KEGG: mhu:Mhun_2265 pre-mRNA processing ribonucleoprotein, binding region.
  
 
 0.978
rps6e
PFAM: ribosomal protein S6e; KEGG: mhu:Mhun_2488 ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.977
ABN56415.1
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; KEGG: mhu:Mhun_2603 protein of unknown function RIO1.
   
 
 0.967
rps11
SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 0.963
rps5
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
 
 0.950
rpl10
LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.938
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: mhu:Mhun_2232 ribosomal protein L30P.
 
 
 0.936
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.