STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_0121PFAM: periplasmic solute binding protein; KEGG: ape:APE0531 putative manganese transport system substrate-binding protein. (300 aa)    
Predicted Functional Partners:
Tpen_0123
PFAM: ABC-3 protein; KEGG: ape:APE0534 putative manganese transport system permease protein.
  
 0.997
Tpen_0122
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ape:APE0532 putative manganese transport system ATP-binding protein.
 
  
 0.993
rps14
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.832
Tpen_0973
PFAM: regulatory protein, MarR; iron dependent repressor; KEGG: afu:AF2395 iron-dependent repressor.
  
  
 0.673
Tpen_0124
Transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: ape:APE0535 hypothetical protein.
     
 0.613
Tpen_1808
PFAM: extracellular solute-binding protein, family 1; KEGG: tko:TK0570 ABC-type iron(III) transport system, periplasmic component.
 
  
 0.597
Tpen_1428
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ape:APE2273 hypothetical protein.
 
   
 0.493
Tpen_1424
PFAM: periplasmic binding protein; KEGG: afu:AF0432 iron (III) transport system substrate-binding protein.
 
   
 0.489
Tpen_1426
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mtp:Mthe_0442 ABC transporter related.
  
  
 0.487
speE
Spermine synthase / spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
       0.447
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.