STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_0200D-fructose 1,6-bisphosphatase; PFAM: inositol monophosphatase; KEGG: mma:MM2783 suppressor protein SuhB homolog. (290 aa)    
Predicted Functional Partners:
Tpen_1660
PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: ape:APE1517 myo-inositol-1-phosphate synthase.
 
 
 0.953
Tpen_1251
Hypothetical protein; KEGG: sfu:Sfum_2923 CDP-alcohol phosphatidyltransferase.
 
 
 0.947
Tpen_1013
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; KEGG: cpf:CPF_0085 myo-inositol 2-dehydrogenase.
  
 
 0.928
Tpen_1250
PFAM: Nucleotidyl transferase; KEGG: pfu:PF1058 glucose-1-phosphate thymidylyltransferase.
    
  0.903
Tpen_0201
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: mma:MM0752 hypothetical protein.
 
    0.835
spt5
NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
 
 0.783
Tpen_0199
PFAM: TatD-related deoxyribonuclease; KEGG: sai:Saci_1294 deoxyribonuclease.
       0.779
rps10
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.751
nusA
NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family.
  
 
 0.735
rps4
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.697
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.