Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rpl1 | rpl10 | Tpen_0223 | Tpen_0222 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | 0.999 |
| rpl1 | rpl11 | Tpen_0223 | Tpen_0224 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Large subunit ribosomal protein l11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | 0.999 |
| rpl1 | rpl15 | Tpen_0223 | Tpen_0234 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Large subunit ribosomal protein l15; Binds to the 23S rRNA | 0.999 |
| rpl1 | rpl18 | Tpen_0223 | Tpen_0237 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance | 0.999 |
| rpl1 | rpl2 | Tpen_0223 | Tpen_0227 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Large subunit ribosomal protein l2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome | 0.999 |
| rpl1 | rpl23 | Tpen_0223 | Tpen_0228 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Large subunit ribosomal protein l23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome | 0.999 |
| rpl1 | rpl3 | Tpen_0223 | Tpen_0230 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Large subunit ribosomal protein l3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.999 |
| rpl1 | rpl30 | Tpen_0223 | Tpen_0235 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: neq:NEQ311 LSU ribosomal protein L30P | 0.999 |
| rpl1 | rps19 | Tpen_0223 | Tpen_0225 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Small subunit ribosomal protein s19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | 0.999 |
| rpl1 | rps5 | Tpen_0223 | Tpen_0236 | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | Small subunit ribosomal protein s5; With S4 and S12 plays an important role in translational accuracy | 0.999 |
| rpl10 | rpl1 | Tpen_0222 | Tpen_0223 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release | 0.999 |
| rpl10 | rpl11 | Tpen_0222 | Tpen_0224 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | 0.999 |
| rpl10 | rpl15 | Tpen_0222 | Tpen_0234 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l15; Binds to the 23S rRNA | 0.999 |
| rpl10 | rpl18 | Tpen_0222 | Tpen_0237 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance | 0.999 |
| rpl10 | rpl2 | Tpen_0222 | Tpen_0227 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome | 0.999 |
| rpl10 | rpl23 | Tpen_0222 | Tpen_0228 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome | 0.999 |
| rpl10 | rpl3 | Tpen_0222 | Tpen_0230 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.999 |
| rpl10 | rpl30 | Tpen_0222 | Tpen_0235 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: neq:NEQ311 LSU ribosomal protein L30P | 0.999 |
| rpl10 | rps19 | Tpen_0222 | Tpen_0225 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Small subunit ribosomal protein s19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | 0.999 |
| rpl10 | rps5 | Tpen_0222 | Tpen_0236 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Small subunit ribosomal protein s5; With S4 and S12 plays an important role in translational accuracy | 0.999 |
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