STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_0371PFAM: protein of unknown function, ATP binding; KEGG: sso:SSO1046 hypothetical protein. (262 aa)    
Predicted Functional Partners:
Tpen_1284
PFAM: Ankyrin; KEGG: afm:Afu1g01020 hypothetical protein.
  
 0.886
Tpen_0334
Bis(5'nucleosyl)-tetraphosphatase, ApaH; PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: sso:SSO1090 serine/threonine phosphatase type 1.
  
 0.854
Tpen_0945
Phospholipid-binding protein, PBP family; PFAM: PEBP family protein; KEGG: ava:Ava_4111 YbhB and YbcL.
   
 0.799
Tpen_0958
SMART: AAA ATPase; KEGG: afu:AF1960 DNA helicase, putative.
  
 0.769
rpl40e
PFAM: Ribosomal protein L40e; KEGG: pai:PAE3255 ribosomal protein L40; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.711
Tpen_1815
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: mka:MK0089 CBS-domain-containing protein.
 
 0.711
Tpen_0042
PFAM: Dual specificity protein phosphatase; metal-dependent phosphohydrolase, HD sub domain; KEGG: tko:TK0241 protein-tyrosine phosphatase.
   
 
 0.687
rps17
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.683
Tpen_0832
PFAM: band 7 protein; KEGG: pho:PH0470 membrane protein.
  
 0.683
rps11
SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 0.682
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.