STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_0539PFAM: aminotransferase class-III; KEGG: pai:PAE1799 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)    
Predicted Functional Partners:
Tpen_0407
KEGG: tko:TK0871 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
  
 0.790
Tpen_0935
PFAM: FAD dependent oxidoreductase; KEGG: pfu:PF1246 sarcosine oxidase, subunit beta.
  
  
 0.619
Tpen_1375
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: afu:AF1328 glycerol-3-phosphate dehydrogenase.
  
  
 0.586
Tpen_0543
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: sto:ST1533 pyruvate ferredoxin oxidoreductase, beta subunit.
     
 0.574
Tpen_0540
TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sto:ST1531 pyruvate ferredoxin oxidoreductase, gamma subunit.
     
 0.561
Tpen_1232
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ape:APE2277 nitrilase.
  
  
 0.560
Tpen_1445
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sto:ST2160 hypothetical glutamine-dependent NAD(+) synthetase.
  
  
 0.560
Tpen_0541
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE3276 2-ketoacid ferredoxin oxidoreductase delta subunit.
       0.557
Tpen_0542
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sto:ST1532 pyruvate ferredoxin oxidoreductase, alpha subunit.
       0.557
Tpen_1089
PFAM: glutamine synthetase, catalytic region; KEGG: tko:TK1796 glutamine synthetase.
  
 0.557
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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