STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_0707Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mth:MTH729 putative transcription factor. (134 aa)    
Predicted Functional Partners:
rps3
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
 
 
 0.909
rps5
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
 
   0.883
rpl18e
KEGG: tko:TK1502 LSU ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family.
 
   0.872
hflX
Small GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
     
 0.872
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: neq:NEQ311 LSU ribosomal protein L30P.
 
 
 
 0.868
rpl21e
PFAM: ribosomal protein L21e; KEGG: pai:PAE3334 ribosomal protein L21; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.866
rpl31e
PFAM: Ribosomal protein L31e; KEGG: pai:PAE3095 ribosomal protein L31; Belongs to the ribosomal protein L31e family.
  
   0.863
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: pfu:PF2054 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.863
rps10
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.862
rps24e
PFAM: Ribosomal protein S24e; KEGG: sso:SSO0435 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 
 0.858
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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