STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_0838PFAM: protein of unknown function DUF369; KEGG: tma:TM1367 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Tpen_0839
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mta:Moth_2270 xylose isomerase-like TIM barrel.
 
     0.803
Tpen_0837
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: mka:MK1409 fructose-1,6-bisphosphate aldolase of the DhnA family.
       0.773
Tpen_0840
PFAM: Auxin Efflux Carrier; KEGG: mka:MK1560 predicted permease.
       0.543
Tpen_0835
Hypothetical protein.
       0.516
Tpen_0836
PFAM: regulatory protein, ArsR; KEGG: mma:MM3173 transcriptional regulator, ArsR family.
       0.516
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.