STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1008PFAM: DNA polymerase, beta domain protein region. (281 aa)    
Predicted Functional Partners:
Tpen_1007
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mka:MK1605 5-formyltetrahydrofolate cyclo-ligase.
       0.773
Tpen_1006
PFAM: iron-containing alcohol dehydrogenase; KEGG: tma:TM0920 alcohol dehydrogenase, iron-containing.
       0.648
Tpen_1009
PFAM: histidine triad (HIT) protein; KEGG: ape:APE2495 histidine triad (HIT) protein.
       0.545
Tpen_1183
Hypothetical protein.
   
 
 0.478
Tpen_1253
PFAM: protein of unknown function DUF86; KEGG: pab:PAB2339 hypothetical protein.
   
 
 0.478
Tpen_1693
PFAM: protein of unknown function DUF86; KEGG: pai:PAE0165 hypothetical protein.
   
 
 0.478
Tpen_1736
Protein of unknown function DUF86; PFAM: DNA polymerase, beta domain protein region; protein of unknown function DUF86; KEGG: pai:PAE2506 paREP11.
   
 
 0.478
Tpen_1010
PFAM: ATP-cone domain protein; KEGG: pai:PAE0026 hypothetical protein.
       0.448
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.