STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1179PFAM: UbiA prenyltransferase; KEGG: tma:TM1528 1,4-dihydroxy-2-naphthoate octaprenyltransferase. (299 aa)    
Predicted Functional Partners:
Tpen_1042
PFAM: UbiA prenyltransferase; KEGG: tma:TM1528 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
  
  
 
0.913
Tpen_0116
PFAM: Methyltransferase type 11; KEGG: gme:Gmet_1167 ubiquinone/menaquinone biosynthesis methyltransferase.
    
 0.901
Tpen_1180
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_02528 radical SAM superfamily.
  
    0.785
Tpen_1178
PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sto:ST0525 hypothetical protein.
       0.737
Tpen_0927
TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: afu:AF1736 3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
   
 
 0.705
Tpen_1166
KEGG: pai:PAE1503 hypothetical protein.
   
 
 0.705
Tpen_1174
PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0418 multiple sugar transport system substrate-binding protein.
 
     0.556
Tpen_1175
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0419 multiple sugar transport system permease protein.
  
    0.532
Tpen_1176
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0420 multiple sugar transport system permease protein.
       0.529
Tpen_1177
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tko:TK1775 ABC-type maltdextrin transport system, ATPase component.
       0.529
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.