STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1213KEGG: pab:PAB0531.2n hypothetical protein. (93 aa)    
Predicted Functional Partners:
Tpen_1212
Monomethylamine corrinoid protein; PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: mta:Moth_1208 5-methyltetrahydrofolate--homocysteine S-methyltransferase.
       0.773
Tpen_0327
KEGG: mja:MJ1603 ribose 5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase.
  
    0.755
Tpen_1211
KEGG: mac:MA2972 monomethylamine methyltransferase.
       0.705
Tpen_1214
KEGG: sso:SSO0118 hypothetical protein.
       0.574
Tpen_0105
PFAM: isochorismatase hydrolase; KEGG: tac:Ta0454 isochorismatase.
  
    0.539
Tpen_1215
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: reh:H16_B0034 UDP-N-acetyl-D-mannosamine 6-dehydrogenase.
       0.453
Tpen_1466
PFAM: UspA domain protein; KEGG: sto:ST1524 hypothetical protein.
  
  
 0.414
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.