STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1397PFAM: DNA polymerase, beta domain protein region; KEGG: sto:ST2583 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Tpen_1396
PFAM: HEPN domain protein; KEGG: sto:ST1714 hypothetical protein.
       0.819
Tpen_1398
PFAM: ABC-2 type transporter; KEGG: pho:PH1846 putative ABC-2 type transport system permease protein.
       0.581
Tpen_1399
PFAM: ABC-2 type transporter; KEGG: tko:TK2028 ABC-type multidrug transport system, permease component.
       0.581
Tpen_1400
KEGG: ape:APE2516 putative ABC-2 type transport system ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.581
Tpen_1183
Hypothetical protein.
   
 
 0.478
Tpen_1253
PFAM: protein of unknown function DUF86; KEGG: pab:PAB2339 hypothetical protein.
   
 
 0.478
Tpen_1693
PFAM: protein of unknown function DUF86; KEGG: pai:PAE0165 hypothetical protein.
   
 
 0.478
Tpen_1736
Protein of unknown function DUF86; PFAM: DNA polymerase, beta domain protein region; protein of unknown function DUF86; KEGG: pai:PAE2506 paREP11.
   
 
 0.478
Tpen_1401
PFAM: transcriptional regulator PadR family protein; KEGG: sso:SSO0049 hypothetical protein.
       0.412
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.