STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1505Cytochrome bd-type quinol oxidase subunit 1-like protein; KEGG: afu:AF2296 cytochrome oxidase,subunit I. (396 aa)    
Predicted Functional Partners:
Tpen_1506
PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: afu:AF2297 cytochrome bd-I oxidase subunit I.
 
  
 0.994
Tpen_1250
PFAM: Nucleotidyl transferase; KEGG: pfu:PF1058 glucose-1-phosphate thymidylyltransferase.
  
     0.562
Tpen_1428
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ape:APE2273 hypothetical protein.
 
     0.551
Tpen_1508
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: mth:MTH737 coenzyme F420-reducing hydrogenase, delta subunit homolog.
  
    0.543
Tpen_1374
Hypothetical protein.
  
     0.538
Tpen_1507
KEGG: oih:OB0366 hypothetical protein.
       0.528
Tpen_1504
Hypothetical protein.
       0.517
tatA
Sec-independent protein translocase TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
 
   
 0.484
Tpen_0740
PFAM: metallophosphoesterase; KEGG: sai:Saci_0268 hypothetical protein.
  
     0.456
Tpen_1830
PFAM: Desulfoferrodoxin, ferrous iron-binding region; KEGG: tte:TTE2229 putative superoxide reductase.
 
   
 0.449
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.