STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1506PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: afu:AF2297 cytochrome bd-I oxidase subunit I. (541 aa)    
Predicted Functional Partners:
Tpen_1505
Cytochrome bd-type quinol oxidase subunit 1-like protein; KEGG: afu:AF2296 cytochrome oxidase,subunit I.
 
  
 0.994
Tpen_0226
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mtp:Mthe_1544 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.573
Tpen_1508
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: mth:MTH737 coenzyme F420-reducing hydrogenase, delta subunit homolog.
  
    0.543
Tpen_1507
KEGG: oih:OB0366 hypothetical protein.
       0.528
Tpen_1504
Hypothetical protein.
       0.517
Tpen_1428
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ape:APE2273 hypothetical protein.
 
     0.503
Tpen_0045
KEGG: sat:SYN_00288 uncharacterized protein involved in formate dehydrogenase formation.
 
     0.437
Tpen_0121
PFAM: periplasmic solute binding protein; KEGG: ape:APE0531 putative manganese transport system substrate-binding protein.
 
     0.411
Tpen_1457
Rubredoxin-type Fe(Cys)4 protein; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
  
 0.403
Tpen_1582
PFAM: Radical SAM domain protein; KEGG: pai:PAE3093 molybdenum cofactor biosynthesis protein (MoaA).
  
     0.403
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.