STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1531PFAM: SufBD protein; KEGG: mba:Mbar_A1079 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Tpen_1530
PFAM: ABC transporter related; KEGG: sto:ST1201 hypothetical ABC transporter ATP-binding protein.
 
 0.997
Tpen_1205
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ape:APE1702 ATP-dependent transporter.
 
 0.981
Tpen_0949
TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE2670 selenocysteine lyase.
  
 
 0.889
Tpen_1529
PFAM: major facilitator superfamily MFS_1; KEGG: pab:PAB0913 multidrug resistance protein.
       0.608
Tpen_1528
PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mta:Moth_0736 peptidase S1 and S6, chymotrypsin/Hap.
  
  
 0.543
Tpen_1207
PFAM: SufBD protein; KEGG: pfu:PF1285 hypothetical protein.
 
   
 0.476
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.