STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1604SMART: ParB domain protein nuclease; KEGG: ape:APE0702 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Tpen_1605
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ape:APE1586 cysteine synthase.
    
 0.982
Tpen_1395
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: aba:Acid345_2500 cysteine synthases.
    
 0.925
Tpen_0987
KEGG: bba:Bd2331 partition protein, ParA homolog.
  
 
 0.902
Tpen_1003
ATPases involved in chromosome partitioning-like protein; KEGG: pai:PAE0153 hypothetical protein.
  
 
 0.902
Tpen_1066
PFAM: ParB domain protein nuclease; KEGG: ape:APE0702 hypothetical protein.
     
 
0.900
Tpen_0611
L-threonine ammonia-lyase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pai:PAE2316 threonine dehydratase.
  
 
 0.840
Tpen_1606
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: pab:PAB0598 rubrerythrin.
       0.553
Tpen_1603
Hypothetical protein.
       0.482
Tpen_1607
Hypothetical protein.
       0.415
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.