STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpen_1688PFAM: HEPN domain protein; KEGG: sto:ST0794 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Tpen_1689
PFAM: DNA polymerase, beta domain protein region; KEGG: sso:SSO1884 hypothetical protein.
   
   0.810
Tpen_1686
PFAM: DNA polymerase, beta domain protein region; KEGG: pai:PAE2784 hypothetical protein.
   
   0.570
Tpen_1691
Nucleotidyltransferase; PFAM: DNA polymerase, beta domain protein region; KEGG: pfu:PF0772 hypothetical protein.
   
   0.534
Tpen_1687
PFAM: HEPN domain protein; KEGG: sto:ST2493 hypothetical protein.
       0.518
Tpen_1690
PFAM: HEPN domain protein; KEGG: ttj:TTHA0427 hypothetical protein.
       0.449
Your Current Organism:
Thermofilum pendens
NCBI taxonomy Id: 368408
Other names: T. pendens Hrk 5, Thermofilum pendens Hrk 5, Thermofilum pendens str. Hrk 5, Thermofilum pendens strain Hrk 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.