SFJ01675.1 protein (Terrisporobacter glycolicus)

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

SFJ01675.1

AAA ATPase domain-containing protein. (640 aa)

Predicted Functional Partners:

SFJ31744.1

0.774

SFJ38200.1

0.773

SFJ38506.1

0.773

SFJ39718.1

0.769

SFJ48332.1

0.765

SFJ48318.1

0.730

SFJ34045.1

0.719

SFJ30030.1

0.705

SFJ10809.1

0.688

SFJ10930.1

0.688

Your Current Organism:

Terrisporobacter glycolicus

NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFJ01675.1	SFJ10809.1	SAMN02910355_0607	SAMN02910355_1047	AAA ATPase domain-containing protein.	Type I restriction modification DNA specificity domain-containing protein.	0.688
SFJ01675.1	SFJ10930.1	SAMN02910355_0607	SAMN02910355_1051	AAA ATPase domain-containing protein.	Type I restriction enzyme, S subunit.	0.688
SFJ01675.1	SFJ30030.1	SAMN02910355_0607	SAMN02910355_2076	AAA ATPase domain-containing protein.	Hypothetical protein.	0.705
SFJ01675.1	SFJ31744.1	SAMN02910355_0607	SAMN02910355_2164	AAA ATPase domain-containing protein.	Protein of unknown function.	0.774
SFJ01675.1	SFJ34045.1	SAMN02910355_0607	SAMN02910355_2298	AAA ATPase domain-containing protein.	Hypothetical protein.	0.719
SFJ01675.1	SFJ38200.1	SAMN02910355_0607	SAMN02910355_2556	AAA ATPase domain-containing protein.	Hypothetical protein.	0.773
SFJ01675.1	SFJ38506.1	SAMN02910355_0607	SAMN02910355_2578	AAA ATPase domain-containing protein.	Acyltransferase family protein.	0.773
SFJ01675.1	SFJ39718.1	SAMN02910355_0607	SAMN02910355_2652	AAA ATPase domain-containing protein.	EpsG family protein.	0.769
SFJ01675.1	SFJ48318.1	SAMN02910355_0607	SAMN02910355_2695	AAA ATPase domain-containing protein.	ABC-2 family transporter protein.	0.730
SFJ01675.1	SFJ48332.1	SAMN02910355_0607	SAMN02910355_2696	AAA ATPase domain-containing protein.	ABC-2 family transporter protein.	0.765
SFJ10809.1	SFJ01675.1	SAMN02910355_1047	SAMN02910355_0607	Type I restriction modification DNA specificity domain-containing protein.	AAA ATPase domain-containing protein.	0.688
SFJ10809.1	SFJ10930.1	SAMN02910355_1047	SAMN02910355_1051	Type I restriction modification DNA specificity domain-containing protein.	Type I restriction enzyme, S subunit.	0.504
SFJ10809.1	SFJ30030.1	SAMN02910355_1047	SAMN02910355_2076	Type I restriction modification DNA specificity domain-containing protein.	Hypothetical protein.	0.624
SFJ10930.1	SFJ01675.1	SAMN02910355_1051	SAMN02910355_0607	Type I restriction enzyme, S subunit.	AAA ATPase domain-containing protein.	0.688
SFJ10930.1	SFJ10809.1	SAMN02910355_1051	SAMN02910355_1047	Type I restriction enzyme, S subunit.	Type I restriction modification DNA specificity domain-containing protein.	0.504
SFJ10930.1	SFJ30030.1	SAMN02910355_1051	SAMN02910355_2076	Type I restriction enzyme, S subunit.	Hypothetical protein.	0.624
SFJ30030.1	SFJ01675.1	SAMN02910355_2076	SAMN02910355_0607	Hypothetical protein.	AAA ATPase domain-containing protein.	0.705
SFJ30030.1	SFJ10809.1	SAMN02910355_2076	SAMN02910355_1047	Hypothetical protein.	Type I restriction modification DNA specificity domain-containing protein.	0.624
SFJ30030.1	SFJ10930.1	SAMN02910355_2076	SAMN02910355_1051	Hypothetical protein.	Type I restriction enzyme, S subunit.	0.624
SFJ31744.1	SFJ01675.1	SAMN02910355_2164	SAMN02910355_0607	Protein of unknown function.	AAA ATPase domain-containing protein.	0.774

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

25

average node degree:

4.55

avg. local clustering coefficient:

0.885

expected number of edges:

18

PPI enrichment p-value:

0.0742

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

3 of 22

1.64

0.8

0.0249

GO:0009229

Thiamine diphosphate biosynthetic process

2 of 6

2.03

0.77

0.0363

GO:0042364

Water-soluble vitamin biosynthetic process

3 of 38

1.41

0.68

0.0363

GO:0018130

Heterocycle biosynthetic process

6 of 218

0.95

0.56

0.0249

GO:1901362

Organic cyclic compound biosynthetic process

6 of 229

0.93

0.55

0.0249

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003899

DNA-directed 5-3 RNA polymerase activity

3 of 5

2.29

1.63

0.00083

GO:1990107

Thiazole synthase activity

2 of 4

2.21

0.9

0.0219

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000428

DNA-directed RNA polymerase complex

3 of 5

2.29

2.0

0.00015

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5494

Mixed, incl. Thiazole synthase activity, and DNA binding HTH domain, AraC-type

5 of 13

2.09

2.96

6.66e-07

CL:388

Mixed, incl. RNA polymerase, and RbpA superfamily

2 of 8

1.91

0.71

0.0448

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03020

RNA polymerase

3 of 4

2.38

2.12

9.70e-05

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000428

DNA-directed RNA polymerase complex

4 of 45

1.46

1.1

0.0028

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0240

DNA-directed RNA polymerase

3 of 5

2.29

1.89

0.00025

KW-0548

Nucleotidyltransferase

3 of 34

1.45

0.89

0.0110

KW-0804

Transcription

5 of 132

1.09

0.84

0.0031

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00342

Helix_turn_helix, arabinose operon control protein

2 of 8

1.91

0.73

0.0409

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