STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ04186.1Signal transduction histidine kinase. (415 aa)    
Predicted Functional Partners:
SFJ04170.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.967
SFJ04232.1
Putative ABC transport system permease protein.
 
     0.907
SFJ38394.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.867
SFJ04212.1
Putative ABC transport system ATP-binding protein.
 
     0.836
SFJ49117.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  0.811
SFJ52208.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
   0.802
SFJ67384.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.801
SFJ09484.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  0.771
SFJ15520.1
Two-component system, OmpR family, response regulator VanR.
 
  0.765
SFJ51063.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
   0.761
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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