STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ08798.1Signal transduction histidine kinase. (326 aa)    
Predicted Functional Partners:
SFJ08774.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.974
SFJ08838.1
Putative ABC transport system permease protein.
 
 
 0.902
SFJ49239.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.888
SFI92698.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.878
SFJ21974.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.877
SFJ52110.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.870
SFJ38394.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.867
SFJ08821.1
Putative ABC transport system ATP-binding protein.
 
     0.861
SFJ49200.1
Putative ABC transport system permease protein.
 
 
 0.757
SFI99907.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.738
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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