SFJ14308.1 protein (Terrisporobacter glycolicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFJ14308.1

Uncharacterized membrane protein. (367 aa)

Predicted Functional Partners:

SFJ14332.1

0.927

SFJ28957.1

0.590

SFJ08743.1

0.543

SFJ35113.1

0.540

SFJ27073.1

0.510

SFJ32460.1

0.503

SFI95060.1

0.487

SFI94487.1

0.462

SFJ53049.1

0.462

mreD

0.458

Your Current Organism:

Terrisporobacter glycolicus

NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI94487.1	SFJ14308.1	SAMN02910355_0241	SAMN02910355_1216	Fusaric acid resistance protein-like.	Uncharacterized membrane protein.	0.462
SFI94487.1	SFJ32460.1	SAMN02910355_0241	SAMN02910355_2202	Fusaric acid resistance protein-like.	Uncharacterized membrane protein YkoI.	0.456
SFI95060.1	SFJ14308.1	SAMN02910355_0271	SAMN02910355_1216	Phage conserved hypothetical protein, C-terminal domain-containing protein.	Uncharacterized membrane protein.	0.487
SFJ08743.1	SFJ14308.1	SAMN02910355_0950	SAMN02910355_1216	ABC-2 type transport system permease protein.	Uncharacterized membrane protein.	0.543
SFJ08743.1	SFJ28957.1	SAMN02910355_0950	SAMN02910355_2007	ABC-2 type transport system permease protein.	CAAX protease self-immunity.	0.518
SFJ14308.1	SFI94487.1	SAMN02910355_1216	SAMN02910355_0241	Uncharacterized membrane protein.	Fusaric acid resistance protein-like.	0.462
SFJ14308.1	SFI95060.1	SAMN02910355_1216	SAMN02910355_0271	Uncharacterized membrane protein.	Phage conserved hypothetical protein, C-terminal domain-containing protein.	0.487
SFJ14308.1	SFJ08743.1	SAMN02910355_1216	SAMN02910355_0950	Uncharacterized membrane protein.	ABC-2 type transport system permease protein.	0.543
SFJ14308.1	SFJ14332.1	SAMN02910355_1216	SAMN02910355_1217	Uncharacterized membrane protein.	GntR family transcriptional regulator.	0.927
SFJ14308.1	SFJ27073.1	SAMN02910355_1216	SAMN02910355_1901	Uncharacterized membrane protein.	Hypothetical protein.	0.510
SFJ14308.1	SFJ28957.1	SAMN02910355_1216	SAMN02910355_2007	Uncharacterized membrane protein.	CAAX protease self-immunity.	0.590
SFJ14308.1	SFJ32460.1	SAMN02910355_1216	SAMN02910355_2202	Uncharacterized membrane protein.	Uncharacterized membrane protein YkoI.	0.503
SFJ14308.1	SFJ35113.1	SAMN02910355_1216	SAMN02910355_2372	Uncharacterized membrane protein.	Inhibitor of the KinA pathway to sporulation, predicted exonuclease.	0.540
SFJ14308.1	SFJ53049.1	SAMN02910355_1216	SAMN02910355_3001	Uncharacterized membrane protein.	Ubiquinone/menaquinone biosynthesis C-methylase UbiE.	0.462
SFJ14308.1	mreD	SAMN02910355_1216	SAMN02910355_0317	Uncharacterized membrane protein.	Rod shape-determining protein MreD.	0.458
SFJ14332.1	SFJ14308.1	SAMN02910355_1217	SAMN02910355_1216	GntR family transcriptional regulator.	Uncharacterized membrane protein.	0.927
SFJ27073.1	SFJ14308.1	SAMN02910355_1901	SAMN02910355_1216	Hypothetical protein.	Uncharacterized membrane protein.	0.510
SFJ27073.1	SFJ53049.1	SAMN02910355_1901	SAMN02910355_3001	Hypothetical protein.	Ubiquinone/menaquinone biosynthesis C-methylase UbiE.	0.749
SFJ27073.1	mreD	SAMN02910355_1901	SAMN02910355_0317	Hypothetical protein.	Rod shape-determining protein MreD.	0.508
SFJ28957.1	SFJ08743.1	SAMN02910355_2007	SAMN02910355_0950	CAAX protease self-immunity.	ABC-2 type transport system permease protein.	0.518