STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ21858.1Ferredoxin. (254 aa)    
Predicted Functional Partners:
trmD
tRNA (guanine37-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
      0.775
SFJ37632.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.728
SFJ12128.1
4Fe-4S dicluster domain-containing protein.
 
  
 0.701
SFJ16748.1
CoA-disulfide reductase; Belongs to the sulfur carrier protein TusA family.
    
  0.647
SFJ47979.1
CoA-disulfide reductase; Belongs to the sulfur carrier protein TusA family.
    
  0.647
SFJ21878.1
Hypothetical protein.
       0.524
SFJ21840.1
TIGR04076 family protein.
       0.518
SFJ36365.1
Aldehyde oxidoreductase.
 
   
 0.467
SFJ21899.1
Hypothetical protein.
       0.422
SFJ17183.1
Formate dehydrogenase major subunit.
     
 0.402
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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