STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ27022.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (375 aa)    
Predicted Functional Partners:
SFJ37632.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.640
SFJ26995.1
Hypothetical protein.
  
    0.487
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
    0.461
SFJ70621.1
Competence protein ComFC.
   
    0.444
SFJ26982.1
Helix-turn-helix.
       0.424
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.