STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ28311.1Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain. (332 aa)    
Predicted Functional Partners:
SFJ28295.1
Polysaccharide deacetylase family sporulation protein PdaB.
       0.701
SFJ28275.1
Hypothetical protein.
       0.577
SFJ17796.1
Hypothetical protein.
   
    0.502
SFJ53979.1
Hypothetical protein.
   
    0.502
SFJ28327.1
Uncharacterized conserved protein.
       0.497
SFJ72907.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
  0.408
SFJ65656.1
Oxaloacetate decarboxylase, alpha subunit.
    
  0.407
SFJ61177.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.