STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ35341.1Uncharacterized protein conserved in bacteria. (443 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.893
SFI94142.1
SH3 domain-containing protein.
  
 
 0.873
SFJ06687.1
Cell wall-associated hydrolase, NlpC family.
  
 
 0.873
SFJ24702.1
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family.
  
 
 0.873
SFJ66473.1
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family.
  
 
 0.873
SFJ19226.1
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family.
  
 0.784
SFJ62689.1
Uridine kinase.
    
  0.692
rph
Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family/ribonuclease PH,TIGR01966; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
  0.675
deoD
Purine-nucleoside phosphorylase.
    
 0.669
SFJ27037.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.654
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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