Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFJ30973.1 | SFJ53322.1 | SAMN02910355_2124 | SAMN02910355_3018 | Dihydropyrimidinase. | Nucleobase:cation symporter-2, NCS2 family. | 0.769 |
SFJ30973.1 | SFJ71198.1 | SAMN02910355_2124 | SAMN02910355_3821 | Dihydropyrimidinase. | Phosphoribosylformylglycinamidine synthase. | 0.504 |
SFJ30973.1 | carA | SAMN02910355_2124 | SAMN02910355_3741 | Dihydropyrimidinase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.975 |
SFJ30973.1 | carB | SAMN02910355_2124 | SAMN02910355_3742 | Dihydropyrimidinase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.978 |
SFJ30973.1 | pyrB | SAMN02910355_2124 | SAMN02910355_3798 | Dihydropyrimidinase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.998 |
SFJ30973.1 | pyrC | SAMN02910355_2124 | SAMN02910355_0944 | Dihydropyrimidinase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.722 |
SFJ30973.1 | pyrE | SAMN02910355_2124 | SAMN02910355_3801 | Dihydropyrimidinase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.841 |
SFJ30973.1 | pyrF | SAMN02910355_2124 | SAMN02910355_3740 | Dihydropyrimidinase. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.793 |
SFJ30973.1 | pyrR | SAMN02910355_2124 | SAMN02910355_0605 | Dihydropyrimidinase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.861 |
SFJ53322.1 | SFJ30973.1 | SAMN02910355_3018 | SAMN02910355_2124 | Nucleobase:cation symporter-2, NCS2 family. | Dihydropyrimidinase. | 0.769 |
SFJ53322.1 | SFJ71198.1 | SAMN02910355_3018 | SAMN02910355_3821 | Nucleobase:cation symporter-2, NCS2 family. | Phosphoribosylformylglycinamidine synthase. | 0.738 |
SFJ53322.1 | carA | SAMN02910355_3018 | SAMN02910355_3741 | Nucleobase:cation symporter-2, NCS2 family. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.759 |
SFJ53322.1 | carB | SAMN02910355_3018 | SAMN02910355_3742 | Nucleobase:cation symporter-2, NCS2 family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.758 |
SFJ53322.1 | pyrB | SAMN02910355_3018 | SAMN02910355_3798 | Nucleobase:cation symporter-2, NCS2 family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.793 |
SFJ53322.1 | pyrC | SAMN02910355_3018 | SAMN02910355_0944 | Nucleobase:cation symporter-2, NCS2 family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.710 |
SFJ53322.1 | pyrE | SAMN02910355_3018 | SAMN02910355_3801 | Nucleobase:cation symporter-2, NCS2 family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.765 |
SFJ53322.1 | pyrF | SAMN02910355_3018 | SAMN02910355_3740 | Nucleobase:cation symporter-2, NCS2 family. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.773 |
SFJ53322.1 | pyrR | SAMN02910355_3018 | SAMN02910355_0605 | Nucleobase:cation symporter-2, NCS2 family. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.793 |
SFJ53322.1 | xpt | SAMN02910355_3018 | SAMN02910355_3017 | Nucleobase:cation symporter-2, NCS2 family. | Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. | 0.991 |
SFJ71198.1 | SFJ30973.1 | SAMN02910355_3821 | SAMN02910355_2124 | Phosphoribosylformylglycinamidine synthase. | Dihydropyrimidinase. | 0.504 |
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