STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ56233.1Spore maturation protein B. (173 aa)    
Predicted Functional Partners:
SFJ56245.1
Spore maturation protein A.
  
 0.999
SFJ01223.1
Stage IV sporulation protein A.
  
   
 0.723
SFJ02388.1
Stage III sporulation protein AA.
  
  
 0.721
spoIIIAD
Stage III sporulation protein AD.
  
   
 0.714
SFJ02233.1
Sporulation integral membrane protein YlbJ.
 
  
 0.675
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.620
SFJ02863.1
Stage II sporulation protein M.
   
  
 0.592
SFI96795.1
Stage II sporulation protein P.
  
   
 0.589
SFJ69754.1
Stage II sporulation protein R.
  
   
 0.577
SFJ02460.1
Stage III sporulation protein AE.
  
  
 0.545
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.