STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ70621.1Competence protein ComFC. (260 aa)    
Predicted Functional Partners:
SFJ04390.1
DNA processing protein.
 
 
 0.886
SFI96707.1
Competence protein ComEC.
 
  
 0.857
SFJ04366.1
Magnesium chelatase family protein.
 
  
 0.835
SFJ19288.1
DNA processing protein.
 
 
 0.830
recD2
Exodeoxyribonuclease V alpha subunit; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.807
SFI95752.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.798
SFJ08593.1
Prephenate dehydrogenase.
   
  
 0.754
SFJ04344.1
Putative endonuclease; Belongs to the UPF0102 family.
 
    0.694
SFJ36959.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.693
SFJ70944.1
Teichoic acid transport system ATP-binding protein.
   
    0.659
Your Current Organism:
Terrisporobacter glycolicus
NCBI taxonomy Id: 36841
Other names: ATCC 14880, BCRC 14553, Clostridium glycolicum, Clostridium glycolinum, NCIMB 10632, NCTC 13026, T. glycolicus
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