STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC36579.14-oxalomesaconate hydratase. (240 aa)    
Predicted Functional Partners:
SKC36587.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase.
  
 0.989
SKC36576.1
Hypothetical protein.
 
  
 0.905
SKC84401.1
Regulator of RNase E activity RraA.
 
  
 0.890
SKC86306.1
Regulator of RNase E activity RraA.
 
  
 0.885
SKC70221.1
tRNA nucleotidyltransferase (CCA-adding enzyme).
  
  
 0.853
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
  
 0.847
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.800
SKC69902.1
Mannose-1-phosphate guanylyltransferase.
     
 0.774
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
  
 0.751
SKC76284.1
Fructoselysine 6-phosphate deglycase.
    
 0.741
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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