STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC38605.1Rubredoxin. (53 aa)    
Predicted Functional Partners:
SKC86389.1
NAD(P)H-nitrite reductase.
  
 0.976
SKC88341.1
Nitrite reductase (NADH) large subunit.
  
 0.976
SKC85567.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.891
SKC85452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.885
SKC72567.1
Hydrogenase small subunit.
  
 
 0.859
SKC79387.1
Superoxide reductase.
  
  
 0.827
SKC84815.1
NADH-quinone oxidoreductase subunit F.
   
 
 0.804
SKC48641.1
Flavorubredoxin.
 
  
 0.781
SKC84242.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
  0.773
SKC51267.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
 
 0.756
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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