STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC39420.1Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family. (492 aa)    
Predicted Functional Partners:
SKC39417.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.923
SKC77100.1
Methanogenic corrinoid protein MtbC1.
  
 0.813
SKC35869.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.800
SKC39615.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.792
SKC39633.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.772
SKC77117.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.751
SKC39381.1
N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit.
  
     0.734
SKC36186.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.710
SKC39627.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.566
SKC39484.1
Sugar phosphate isomerase/epimerase.
  
     0.548
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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