STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC40056.1Ferredoxin. (241 aa)    
Predicted Functional Partners:
SKC40045.1
Predicted permeases.
 
     0.965
SKC40036.1
Hypothetical protein.
 
   
 0.948
SKC85567.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.926
SKC85452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.914
SKC40028.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
     0.852
SKC88047.1
Hypothetical protein.
 
     0.810
SKC83353.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.783
SKC92884.1
Sodium pump decarboxylases, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
 
  
 0.769
SKC40250.1
Malate/lactate dehydrogenase.
  
  
 0.747
SKC43023.1
Dihydrolipoamide dehydrogenase.
     
 0.742
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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