STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC41749.1Two-component system, CitB family, sensor kinase. (527 aa)    
Predicted Functional Partners:
SKC41765.1
Two-component system, CitB family, response regulator.
 0.991
SKC80919.1
Two-component system, CitB family, response regulator DctR.
 0.963
SKC56154.1
Response regulator of citrate/malate metabolism.
 
 0.826
SKC41713.1
Uncharacterized protein conserved in bacteria.
       0.751
SKC89083.1
Sensor_kinase_SpoOB-type, alpha-helical domain.
  
  
 
0.743
SKC70812.1
PAS domain S-box-containing protein.
   
 
 0.740
SKC83237.1
Accessory gene regulator B.
    
  0.679
SKC87641.1
Two component transcriptional regulator, LytTR family.
  
 
 0.679
SKC89080.1
Two component transcriptional regulator, LytTR family.
  
 
 0.679
SKC89086.1
Accessory gene regulator B.
    
  0.672
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.