STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC42823.1Cystathione beta-lyase. (393 aa)    
Predicted Functional Partners:
SKC40893.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.787
SKC42825.1
Protein of unknown function.
       0.785
SKC81294.1
Chorismate mutase.
    
  0.784
SKC84942.1
Methionine-gamma-lyase.
 
 
 0.755
SKC70502.1
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.739
SKC42817.1
C4-dicarboxylate transporter, DcuC family.
     
 0.696
SKC76789.1
Aspartate ammonia-lyase.
 
  
  0.689
SKC35471.1
Asparagine synthase (glutamine-hydrolysing).
    
  0.634
SKC64010.1
Homoserine dehydrogenase.
    
 0.612
SKC92604.1
Homoserine dehydrogenase.
    
 0.612
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.