STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC50010.1Protein of unknown function. (88 aa)    
Predicted Functional Partners:
SKC73817.1
Sporulation protein YtrH.
  
     0.704
SKC72761.1
Protein of unknown function.
  
     0.576
SKC63976.1
Uncharacterised protein family (UPF0180).
  
     0.538
SKC37581.1
Spore germination protein KB.
  
     0.537
SKC41600.1
Protein of unknown function.
  
    0.524
SKC50022.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.483
SKC84779.1
Spore germination protein KB.
  
     0.480
SKC65922.1
Predicted membrane protein.
  
     0.473
SKC42622.1
Spore germination protein KB.
  
     0.472
SKC42833.1
Spore germination protein KB.
  
     0.464
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.