STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC50763.1Transketolase subunit B. (312 aa)    
Predicted Functional Partners:
SKC50752.1
Transketolase subunit A.
 0.999
SKC69959.1
Transketolase subunit A.
 0.998
SKC83419.1
Transketolase.
 0.998
SKC84542.1
Transketolase.
 0.998
SKC84523.1
Transketolase subunit A.
 0.996
SKC87204.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.838
SKC61430.1
Ribulose-5-phosphate 3-epimerase.
 
 
 0.796
SKC85567.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.793
SKC85452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.785
SKC51123.1
PTS system, glucose subfamily, IIA component.
    
  0.765
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.